FastQCFastQC Report
Thu 2 May 2024
EGAF00004945402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004945402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences299837195
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGGCT8510813728.3847829486265No Hit
AGAAACTC7459719024.879231544305235No Hit
GACTCAAA7267714324.23886836321291No Hit
TCTGTTGG6296260320.99893010271791No Hit
TCTGTTGA9910980.3305453814694338No Hit
AGAAACTA3637830.12132684205506926No Hit
GACTAAAA3065770.10224782152194294No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)