FastQCFastQC Report
Sun 5 May 2024
EGAF00004945403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004945403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences170033230
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGGAT5284274431.0778922449453No Hit
TCACTCGC4685943627.558987146218417No Hit
GTGACTTG3523581320.722898106446603No Hit
CATGAACA3262093819.185036948365916No Hit
GTGACGTG1784980.1049783033587023No Hit
GTGACTTA1738210.10222766455709864No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)