FastQCFastQC Report
Wed 1 May 2024
EGAF00004945404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004945404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences200858495
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGATGTG6214482230.93960352535749No Hit
CACGGTGC5865807029.20367893824954No Hit
TTTCCACT4272943521.27340195394773No Hit
AGATACAA3486797017.359469909400644No Hit
GCGATGTA2138030.10644458926170886No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)