FastQCFastQC Report
Sun 12 May 2024
EGAF00004945407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004945407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences375653991
Total Bases3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCGCGC12007785831.965015912741894No Hit
GGCGAGTA11137545729.64841574117603No Hit
CAAATACG7072036818.82593282497563No Hit
ACTTCTAT6418076917.085075771230127No Hit
TCTTCTAT17705670.4713292131641429No Hit
CCTTCTAT11906890.31696428855457043No Hit
GCTTCTAT8323020.22156080327654495No Hit
AGTTCTAT8206230.21845182525959106No Hit
GTGCGCGC4547990.12106859261346169No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)