FastQCFastQC Report
Sat 11 May 2024
EGAF00004945411

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004945411
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences219423430
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAGAGC6068633327.65718000124235No Hit
GCGGATAG6059019227.613364716794376No Hit
CATCTCCA4966796222.635669308423445No Hit
TTATCGTT4411224420.103707247671775No Hit
GCGGCTAG5402830.2462284907313681No Hit
CAGCTCCA4308640.1963618926201272No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)