FastQCFastQC Report
Thu 2 May 2024
EGAF00004945412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004945412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences342838533
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCGTTT9159529826.71674540154446No Hit
ATGACCGC8768409925.575917103810497No Hit
GGCTAGCG8289337824.178547631342244No Hit
CAAGTAAA7631053222.258446660661683No Hit
TCTCGTTA10024710.29240324628270414No Hit
GGCTAGCA4016410.11715165051181689No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)