FastQCFastQC Report
Sun 12 May 2024
EGAF00004945421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004945421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences354689615
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGAAC11801475633.272684344028505No Hit
ACACTGTT8293742423.383099051264864No Hit
CAGGATGG8264115023.29956855376214No Hit
TTTACCCA6503788018.336561672379386No Hit
ACCCTGTT4116980.11607275279260715No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)