FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3024381
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCTAA295575097.73074225767189No Hit
CGTGCAAA121560.40193348655476935No Hit
AGTGCTAA76480.2528781922647973No Hit
CGTGGTAA60250.19921431856634464No Hit
CGAGCTAA51720.17101020010375675No Hit
CGTCCTAA37010.12237214821809819No Hit
CGTGCTTA36770.12157859740555176No Hit
CGTGATAA35790.11833826492098713No Hit
CGTGCGAA30260.10005353161522969No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)