FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences680222
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA35650.5240936047349247No Hit
CGACCAGACGCGCTGT34540.5077754027361656No Hit
TAGCTTTACCCTATCC31300.4601438941992467No Hit
CCAGGACTGTAACTCG25140.36958522364757385No Hit
GATGAATGACTCCTAC23970.35238495667590874No Hit
GTTCTCGACCGTAGAG22490.33062735401089643No Hit
ATCTGTACTGGGACTA21160.3110749137781489No Hit
CTTCCTTTGGCTCAGC21110.31033985963406063No Hit
CGATCAAACCCGGCTA20770.30534149145426054No Hit
GGGGGGGGGGGGGGGG20480.30107817741854864No Hit
AGACCATTGAATCCAC19700.2896113327707719No Hit
GGCAACAGAATAGCAA17350.255063787998624No Hit
TGCTGCTACTTTCTTG16830.24741922490010615No Hit
ACAGCCGACTTGCGTA16660.24492004081020607No Hit
AACTTACCTCACCTAA15780.2319830878742528No Hit
CGCGTTGGAGCGGTTC14220.2090493985786993No Hit
ATCGAAAGATTTCCGC13910.20449206288535213No Hit
GTAACTGTGTGAAAGT13630.20037575967845794No Hit
CAATTCGGATAACGGG13320.19581842398511073No Hit
CCCTGAACTAGCTTTG13260.19493635901220485No Hit
AGTGGAGTGAGTTGAA12450.18302848187797513No Hit
GGGTAGAACCAGTCTA12190.1792062003287162No Hit
CGCGATCGATATCTGG11320.1664162582215806No Hit
GTGAAGCGATCCCAGG11260.1655341932486747No Hit
AAGAACCCTTAACCCA11250.16538718241985703No Hit
TTTAGTCTGAGCAATA10930.16068283589769222No Hit
TGGAACACTCCTAGTA10780.15847767346542746No Hit
TTCCTAAACTAATGCC10660.15671354351961567No Hit
CACATCCTGAGCCTAT10530.1548024027449862No Hit
TGCAGTATGACACCGC10310.15156816451099786No Hit
TCCGGGAACGTTCTCC10240.15053908870927432No Hit
CATAGGTACAAGGTGC9970.14656979633119774No Hit
GAGTGTTACACCTGCG9870.14509968804302123No Hit
AGTCCTGCTCGAACGA9820.144364633898933No Hit
TGATAGAGAGACTGTT9750.14333555809720944No Hit
GCAACTTGAAGGTGCA9730.14304153643957415No Hit
TGCAGATACTGCCACG9710.14274751478193884No Hit
CTTTAACTGTCCGTAA9660.14201246063785058No Hit
CTTAGATCTTGTCACA9580.1408363740073094No Hit
CTATTGGGACTTGTGA9270.1362790383139622No Hit
TACGTTTACTGCACCG9170.1348089300257857No Hit
TCTCAGAGATGCATGT9080.13348583256642685No Hit
ATGTACGTGTACTTTC9080.13348583256642685No Hit
AGGTGTGGATCATGTG9050.13304480007997388No Hit
ATTTCTGACGGGTAGT8960.13172170262061503No Hit
TTCTTAGACGTCCCGA8960.13172170262061503No Hit
GGTCTAAACTCCTACC8940.13142768096297974No Hit
TGGCAATTGAGTGGTG8930.1312806701341621No Hit
AGAGTACCTTAATCGC8910.1309866484765268No Hit
CGAGTCTCTGCTACGC8830.12981056184598558No Hit
GCATGATACTTGCGTA8620.1267233344408149No Hit
TGAGGGATGTACGTTG8510.12510621532382077No Hit
GGGTGTGCTCGCAAAG8400.1234890962068266No Hit
TCAAAGCACTCTGCAA8380.12319507454919129No Hit
GGGATGTGACTGGAAG8340.1226070312339207No Hit
CTACAACGAATCTGTG8340.1226070312339207No Hit
GGTCGCATGGTACTAC8270.12157795543219713No Hit
TGAACTGTGAACGTAA8260.12143094460337947No Hit
CACCAGGTGCGCCACA8040.11819670636939116No Hit
TCTATGGGATGCTCAA7890.1159915439371264No Hit
GGCTGACTGAAACTGA7870.1156975222794911No Hit
TACTGTTTGCTTAAGC7830.1151094789642205No Hit
TTGCGGTCTTTTGGGT7830.1151094789642205No Hit
CACATTACTGATGGAC7820.11496246813540284No Hit
AGGCGATGACCTGCGA7650.11246328404550278No Hit
CGAGTCTCTTGGAACG7640.11231627321668515No Hit
CATTCTATGCCTAGCG7590.1115812190725969No Hit
ATGTCCAGACCGCTAG7560.11114018658614393No Hit
ACCAAGTTGAAGCTAA7530.11069915409969099No Hit
TCCGGGTGAACACCTA7530.11069915409969099No Hit
ACGAGGATGAACTAGA7520.11055214327087334No Hit
GTAATCTCTACACAAA7480.10996409995560275No Hit
GATATGAGACCAACGC7420.10908203498269683No Hit
TAGTACCGAACGAGCA7410.10893502415387918No Hit
AGACTACTGGCCCTAG7350.10805295918097327No Hit
GGGCCTTGACTATCTT7330.10775893752333797No Hit
AGCCAATTGTTATGGC7280.10702388337924972No Hit
GCCATTCACCGGAAGT7280.10702388337924972No Hit
TGTAAGCACGCGCTGT7240.10643584006397912No Hit
CTAGCTCACGAATAGT7230.10628882923516146No Hit
TCCATTTGAAATCTGC7230.10628882923516146No Hit
TGCGCAGACATCAGGG7220.1061418184063438No Hit
TCGGACCGATAGGCGA7190.10570078591989086No Hit
CTTTCGTCTCGAACGA7090.10423067763171436No Hit
CATAGTCGAAGATTCC7040.10349562348762611No Hit
ATAGCCAACCGTTCTC6960.10231953685708489No Hit
CTAACAGTGCATGATC6960.10231953685708489No Hit
GCACGGACTTATTGCG6930.10187850437063195No Hit
GTGTGATACCGTGCAC6890.10129046105536134No Hit
TGCTAGTGAAGGCGTA6840.10055540691127308No Hit
TCATCATTGGACTCGC6810.10011437442482014No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)