FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946556

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946556
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences695904
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAATGACTCCTAC44010.6324148158366671No Hit
CTCCTAGTGAACGTAA37640.5408792017289741No Hit
CGACCAGACGCGCTGT34770.4996378810870465No Hit
TAGCTTTACCCTATCC31820.4572469765944728No Hit
CCAGGACTGTAACTCG24000.34487515519381984No Hit
ATCTGTACTGGGACTA22600.32475743780751365No Hit
GTTCTCGACCGTAGAG22590.3246137398261829No Hit
CTTCCTTTGGCTCAGC22580.3244700418448522No Hit
CGATCAAACCCGGCTA21030.3021968547385846No Hit
AGACCATTGAATCCAC20920.30061617694394627No Hit
TGCTGCTACTTTCTTG17950.2579378764887111No Hit
GGCAACAGAATAGCAA17610.2530521451234653No Hit
ACAGCCGACTTGCGTA17190.24701682990757345No Hit
GGGGGGGGGGGGGGGG16090.23121005196119004No Hit
AACTTACCTCACCTAA15300.21985791143606012No Hit
CGCGTTGGAGCGGTTC14580.20951165678024553No Hit
ATCGAAAGATTTCCGC14140.2031889456016922No Hit
GTAACTGTGTGAAAGT13660.19629144249781577No Hit
CCCTGAACTAGCTTTG13290.19097461718857775No Hit
AGTGGAGTGAGTTGAA13170.18925024141260863No Hit
CAATTCGGATAACGGG13100.18824435554329333No Hit
GGGTAGAACCAGTCTA12840.1845082080286936No Hit
AAGAACCCTTAACCCA11790.169419919988964No Hit
TTCCTAAACTAATGCC11760.16898882604497173No Hit
GTGAAGCGATCCCAGG11360.16324090679174139No Hit
CGCGATCGATATCTGG11230.16137283303444153No Hit
TGCAGATACTGCCACG10970.15763668551984183No Hit
CTTTAACTGTCCGTAA10920.15691819561318804No Hit
TTTAGTCTGAGCAATA10850.1559123097438727No Hit
CACATCCTGAGCCTAT10790.15505012185588815No Hit
TGATAGAGAGACTGTT10680.15346944406124982No Hit
TCCGGGAACGTTCTCC10400.1494459005839886No Hit
AGTCCTGCTCGAACGA10270.14757782682668874No Hit
TGGAACACTCCTAGTA10070.14470386720007358No Hit
TCTCAGAGATGCATGT10010.14384167931208902No Hit
AGGTGTGGATCATGTG9820.1411114176668046No Hit
GCAACTTGAAGGTGCA9740.13996183381615857No Hit
GAGTGTTACACCTGCG9620.13823745804018944No Hit
ATTTCTGACGGGTAGT9560.1373752701522049No Hit
CTATTGGGACTTGTGA9550.13723157217087414No Hit
TGCAGTATGACACCGC9500.13651308226422035No Hit
TACGTTTACTGCACCG9470.13608198832022808No Hit
TCAAAGCACTCTGCAA9340.13421391456292822No Hit
CTTAGATCTTGTCACA9250.1329206327309514No Hit
CATAGGTACAAGGTGC9070.13033406906699774No Hit
TGAACTGTGAACGTAA9020.12961557916034394No Hit
ATGTACGTGTACTTTC8870.12746010944038258No Hit
AGAGTACCTTAATCGC8810.12659792155239805No Hit
GGTCGCATGGTACTAC8740.12559203568308272No Hit
TTCTTAGACGTCCCGA8740.12559203568308272No Hit
TCTATGGGATGCTCAA8740.12559203568308272No Hit
TGGCAATTGAGTGGTG8700.1250172437577597No Hit
GGTCTAAACTCCTACC8660.12444245183243666No Hit
TGAGGGATGTACGTTG8620.12386765990711363No Hit
CGAGTCTCTGCTACGC8580.12329286798179058No Hit
TCCATTTGAAATCTGC8550.12286177403779831No Hit
CTCAATTTGGAATCTC8530.1225743780751368No Hit
GGGATGTGACTGGAAG8330.11970041844852164No Hit
CACCAGGTGCGCCACA8230.11826343863521405No Hit
CTAGCTCACGAATAGT8220.1181197406538833No Hit
GGGTGTGCTCGCAAAG8220.1181197406538833No Hit
GCATGATACTTGCGTA8210.11797604267255253No Hit
CACATTACTGATGGAC8170.1174012507472295No Hit
TCGGACCGATAGGCGA8070.1159642709339219No Hit
AGCCAATTGTTATGGC8000.11495838506460662No Hit
AGACTACTGGCCCTAG7940.11409619717662206No Hit
CTACAACGAATCTGTG7920.11380880121396054No Hit
TACTGTTTGCTTAAGC7900.11352140525129903No Hit
TGTAAGCACGCGCTGT7790.11194072745666069No Hit
CTTTCGTCTCGAACGA7740.11122223755000689No Hit
GCCATTCACCGGAAGT7730.11107853956867614No Hit
GTAATCTCTACACAAA7720.11093484158734537No Hit
TTGCGGTCTTTTGGGT7710.11079114360601462No Hit
CATTCTATGCCTAGCG7690.11050374764335309No Hit
ACCTCAGCTAATCCGT7690.11050374764335309No Hit
CGAGTCTCTTGGAACG7680.11036004966202234No Hit
GGGCCTTGACTATCTT7670.11021635168069158No Hit
TCCGGGTGAACACCTA7610.10935416379270704No Hit
GGCTGACTGAAACTGA7590.10906676783004553No Hit
ATGTCCAGACCGCTAG7560.10863567388605326No Hit
TGCTAGTGAAGGCGTA7380.1060491102220996No Hit
AGGCGATGACCTGCGA7360.10576171425943807No Hit
TGCGCAGACATCAGGG7360.10576171425943807No Hit
TAGTACCGAACGAGCA7290.10475582839012276No Hit
ATAGCCAACCGTTCTC7230.10389364050213822No Hit
GTCTAATCTAAGTTCC7220.10374994252080746No Hit
CATAGTCGAAGATTCC7100.10202556674483837No Hit
TCATCATTGGACTCGC7060.10145077481951534No Hit
ACCAAGTTGAAGCTAA7040.10116337885685382No Hit
CAATGTGTGACCGTTA7030.10101968087552306No Hit
GATATGAGACCAACGC7010.10073228491286154No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)