FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004946561

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946561
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16356026
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTCAGAC1605315198.14823600793983No Hit
ACTCAGCC845050.5166597314041932No Hit
ACACAGAC444590.2718203064729782No Hit
ACTCAGAA311200.19026626639013658No Hit
ACTCACAC183540.11221552227906706No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)