FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2970443
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG74550.2509726663665992No Hit
GGACACCTGGCTCCTT64570.21737498413536296No Hit
GTTAAGAGAGTACGTT59980.20192274350997477No Hit
TCGCGGTGAGTCTTGA55800.18785076838707224No Hit
TACCAGTGATACGATC51700.17404811336221565No Hit
TTGTGGTGAAAGACAT51150.17219653768814955No Hit
ATCTTACTGGTTTGGT50850.17118658732047712No Hit
ATAGATGGAGAGTAAT48750.16411693474677008No Hit
CGCTTACTGATCACAC48430.16303965435458617No Hit
ATTCCTAACTGCGTGC47900.16125540870503152No Hit
ATATGCCGAGAACAGC44520.14987663456258882No Hit
TGGAACACTTGAGGCA41640.14018111103293346No Hit
CTTTCTGCTCTTGTGA41210.13873351550593632No Hit
GCTATACGACAGGTGA40210.13536701428036155No Hit
CTTGACGCTCAGGGTA38920.13102422769937008No Hit
AGCTCTGCTGGCCTGT38250.12876867187823499No Hit
ACTGGAACTCTGGAAG37730.12701809124093613No Hit
TGTGACTGACCGTTAA36800.12388724510115157No Hit
AGGTAGCGATTGACCA35910.12089105901039003No Hit
AGTTCACGACCAGAGA35560.11971278358143887No Hit
TGTACCCTGCTGAGAG34180.11506701189014568No Hit
TTCCAAACTCCGCTAG34130.11489868682886693No Hit
ACCCTTTCTAGGTGAC33580.11304711115480082No Hit
TCCCAGACTCCTAACA32380.10900730968411108No Hit
CAGTGGAGAGATCATC31640.10651609877718576No Hit
ACATGTGTGTCAATGC31230.10513583327470011No Hit
ACACTCCACCGTACAT31050.10452986305409664No Hit
TCAGTCCACCCAGCAC30990.10432787298056216No Hit
CACAGCTCTCTCTGGG30940.10415954791928343No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)