FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5383320
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATCCC524640497.45666243136206No Hit
TTTATCCA419570.7793889272790768No Hit
TTTAACCC148700.2762235943618436No Hit
ATTATCCC136040.2527065082514136No Hit
TTTATACC115960.21540610626899384No Hit
TATATCCC111990.20803147500055727No Hit
TTAATCCC88560.16450814738860034No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)