FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004946581

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946581
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31309798
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT3073266398.15669523003629No Hit
AGCTGCGA1035560.330746305038442No Hit
AGCGGCGT591930.18905583485399682No Hit
AGCTGCGG482950.15424883929305452No Hit
AGCAGCGT384810.12290401873560473No Hit
TGCTGCGT317770.10149219103872852No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)