FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11435814
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTGAA1119524297.89632814944349No Hit
CCGTTGAT501610.43863077870976214No Hit
CCGTTAAA377010.32967482682037325No Hit
CCGGTGAA241030.2107676812511991No Hit
CCGATGAA213780.18693903206190657No Hit
CCGTAGAA153630.13434111467710125No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)