FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946591

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946591
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences825048
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA30380.3682210004751239No Hit
GTCGACCGATGCTCAA27860.33767732301635783No Hit
CATTCAACTAGGCATG26720.32385994511834465No Hit
GGGGGGGGGGGGGGGG24930.3021642377170783No Hit
TGTAAGCTGTTGTGAC22260.26980248421909997No Hit
ACTGGGCACTTCTCGC22220.2693176639419767No Hit
GCTTTAGGAACTAGTC19920.24144049800738865No Hit
TAGTTGCGACATAGCT12220.1481125946611591No Hit
CATCAGTGATTCGCAA11850.14362800709776885No Hit
CAGGAGCCTCGTGCAC10070.12205350476578332No Hit
CAGGAGCCTTCCAATG8910.10799371672920849No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)