FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5877601
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG192700.32785485098427064No Hit
ACTGTCCACAGGTCCC110240.18755951620397507No Hit
CTGGTGGACGCGGTTC104870.17842313556160072No Hit
GTGGTTAACGGCCTGT93900.15975905815995337No Hit
AAGACAAACAGTACGG75850.12904924985551078No Hit
GTGTACTGACAGTCCG74910.12744995789948996No Hit
GGGTGAATGGACAAAT65000.11058933738441926No Hit
AGCTATCGACGGTTTA60960.10371578472237228No Hit
TGTCCCATGGCCAGCT60840.10351161979181643No Hit
CATTCAACTCATCTTT60400.10276301504644497No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)