FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2838959
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT83820.29524906840852577No Hit
TCGCGGTGAGTCTTGA77160.2717897651921003No Hit
GGGGGGGGGGGGGGGG67380.2373405181265386No Hit
NNNNNNNNNNNNNNNN57410.20222201165990775No Hit
GTTAAGAGAGTACGTT53050.1868642696143199No Hit
CGCTTACTGATCACAC49110.17298594308688503No Hit
TACCAGTGATACGATC46000.1620312234167524No Hit
ATCTTACTGGTTTGGT44820.15787477029432267No Hit
TTGTGGTGAAAGACAT44000.15498638761602404No Hit
ATAGATGGAGAGTAAT41910.14762453420426289No Hit
ATTCCTAACTGCGTGC41370.14572242853806625No Hit
ATATGCCGAGAACAGC40940.14420778884090965No Hit
TGGAACACTTGAGGCA40470.14255225242773847No Hit
GCGGTTCGAAGCAAGC37780.13307694827575883No Hit
CTTGACGCTCAGGGTA36690.12923751276436188No Hit
GCTATACGACAGGTGA36080.12708883784513972No Hit
CTTTCTGCTCTTGTGA35500.12504583546292847No Hit
AGGTAGCGATTGACCA34690.1221926769636335No Hit
AGCTCTGCTGGCCTGT34170.12036101965544413No Hit
TGTGACTGACCGTTAA32510.1145138059408396No Hit
AGTTCACGACCAGAGA32430.11423201250881045No Hit
ACTGGAACTCTGGAAG31490.1109209396824681No Hit
TGTACCCTGCTGAGAG31370.11049824953442441No Hit
ACGCTCTTGCCTCAAA31060.10940629998531153No Hit
TTCCAAACTCCGCTAG30140.10616567551697646No Hit
ACCCTTTCTAGGTGAC30080.10595433044295463No Hit
ACACTCCACCGTACAT29590.10422834567177616No Hit
ACATGTGTGTCAATGC29540.10405222477675796No Hit
TCAGTCCACCCAGCAC29010.10218534328956495No Hit
CACAGCTCTCTCTGGG28640.10088204866643019No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)