FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1661474
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTGACT161149296.9917073634616No Hit
CACTGCCT240051.4448014233144786No Hit
CACTGACA62560.3765331266092638No Hit
CACAGACT38360.23087932763317393No Hit
AACTGACT20320.12230104112372507No Hit
CACTCACT19830.11935185263206044No Hit
CACTAACT18180.10942091179278159No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)