FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946613

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946613
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences875479
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA44490.5081789511798684No Hit
CGACCAGACGCGCTGT39600.45232381359233065No Hit
TAGCTTTACCCTATCC39090.44649843114455057No Hit
CCAGGACTGTAACTCG30800.3518074105718127No Hit
ATCTGTACTGGGACTA29270.3343312632284727No Hit
GTTCTCGACCGTAGAG27040.3088594929175914No Hit
CTTCCTTTGGCTCAGC26100.29812251350403607No Hit
CGATCAAACCCGGCTA24250.2769912242326772No Hit
AGACCATTGAATCCAC22310.254831926294063No Hit
GGGGGGGGGGGGGGGG22060.25197634666279833No Hit
GGCAACAGAATAGCAA21520.2458082946592665No Hit
TGCTGCTACTTTCTTG21130.2413535904344936No Hit
ACAGCCGACTTGCGTA20590.2351855384309618No Hit
AACTTACCTCACCTAA17830.20365993930179938No Hit
CGCGTTGGAGCGGTTC17590.20091858285578523No Hit
GATGAATGACTCCTAC17350.19817722640977112No Hit
ATCGAAAGATTTCCGC17080.1950932004080052No Hit
GTAACTGTGTGAAAGT16660.19029582662748049No Hit
CAATTCGGATAACGGG16600.18961048751597698No Hit
AGTGGAGTGAGTTGAA16580.1893820411454758No Hit
CCCTGAACTAGCTTTG16300.1861837919584593No Hit
GGGTAGAACCAGTCTA14870.16984987646762514No Hit
AAGAACCCTTAACCCA14530.16596628816910514No Hit
CGCGATCGATATCTGG14350.16391027083459453No Hit
TTTAGTCTGAGCAATA13690.1563715406080557No Hit
TTCCTAAACTAATGCC13630.15568620149655216No Hit
TGGAACACTCCTAGTA13200.15077460453077687No Hit
TGCAGATACTGCCACG12640.14437810615674393No Hit
TCCGGGAACGTTCTCC12460.14232208882223332No Hit
TGATAGAGAGACTGTT12320.14072296422872507No Hit
CTTTAACTGTCCGTAA12270.14015184830247213No Hit
GTGAAGCGATCCCAGG12260.14003762511722154No Hit
CACATCCTGAGCCTAT11960.1366109295597039No Hit
GCAACTTGAAGGTGCA11930.13626826000395212No Hit
AGGTGTGGATCATGTG11850.1353544745219474No Hit
AGTCCTGCTCGAACGA11820.13501180496619564No Hit
TGCAGTATGACACCGC11720.13386957311368974No Hit
CTATTGGGACTTGTGA11720.13386957311368974No Hit
TACGTTTACTGCACCG11680.13341268037268741No Hit
CATAGGTACAAGGTGC11670.13329845718743683No Hit
TCTCAGAGATGCATGT11560.13204200214968037No Hit
CTTAGATCTTGTCACA11310.1291864225184156No Hit
ATGTACGTGTACTTTC11300.12907219933316505No Hit
GAGTGTTACACCTGCG11270.12872952977741328No Hit
ATTTCTGACGGGTAGT11250.1285010834069121No Hit
GGGTGTGCTCGCAAAG10990.1255312805903968No Hit
TGGCAATTGAGTGGTG10870.12416060236738974No Hit
AGAGTACCTTAATCGC10810.1234752632558862No Hit
TCAAAGCACTCTGCAA10630.12141924592137562No Hit
TGAGGGATGTACGTTG10520.12016279088361914No Hit
TTCTTAGACGTCCCGA10520.12016279088361914No Hit
CGAGTCTCTGCTACGC10490.11982012132786737No Hit
TCTATGGGATGCTCAA10460.1194774517721156No Hit
GCATGATACTTGCGTA10330.11799255036385795No Hit
TGAACTGTGAACGTAA10310.11776410399335678No Hit
GGGATGTGACTGGAAG10290.1175356576228556No Hit
GGTCGCATGGTACTAC10250.11707876488185325No Hit
GGTCTAAACTCCTACC10250.11707876488185325No Hit
TACTGTTTGCTTAAGC10030.1145658548063403No Hit
TCCATTTGAAATCTGC9760.1114818288045744No Hit
ACCAAGTTGAAGCTAA9750.11136760561932382No Hit
CACCAGGTGCGCCACA9580.10942581147006382No Hit
GTAATCTCTACACAAA9470.10816935643230734No Hit
AGCCAATTGTTATGGC9450.10794091006180616No Hit
CTACAACGAATCTGTG9440.10782668687655558No Hit
TTGCGGTCTTTTGGGT9360.10691290139455087No Hit
TCCGGGTGAACACCTA9340.1066844550240497No Hit
CATTCTATGCCTAGCG9310.10634178546829792No Hit
CTTTCGTCTCGAACGA9290.10611333909779676No Hit
CTAGCTCACGAATAGT9230.10542799998629322No Hit
TGTAAGCACGCGCTGT9210.10519955361579204No Hit
CACATTACTGATGGAC9150.10451421450428851No Hit
AGACTACTGGCCCTAG9040.10325775946653203No Hit
TGCTAGTGAAGGCGTA9040.10325775946653203No Hit
CATAGTCGAAGATTCC9030.10314353628128145No Hit
TAGTACCGAACGAGCA9010.10291508991078027No Hit
GGGCCTTGACTATCTT8820.10074484939101909No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)