FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1792117
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT365422.0390409777933027No Hit
AAATAGGTGTTGCGTA148970.8312515310105311No Hit
TATCACTACTGGTCCG130430.7277984640511752No Hit
ATGGGTTACCATGCGC124650.6955461055277082No Hit
GTGTTGTGAGGGTAGT83490.4658736008865493No Hit
CTAATCTTGCCACTTC81350.45393241624291275No Hit
CTGCTTTCTCCACTTC72740.40588867802716No Hit
GGCTTGCGACGACATT70330.3924408953210086No Hit
AGAGAATTGCCTCCTA69480.3876979014204988No Hit
AGCCGAGCTGCCCTTT54360.30332840991966487No Hit
CTGGCCAGAGGAATGC52950.2954606200376426No Hit
AATGGTGCTTCGTACA48820.27241524967398895No Hit
GGGGGGGGGGGGGGGG48600.2711876512526805No Hit
TCCCTGTGACCCGCAA41770.23307630026387785No Hit
GCTCCTAACCTATCTT41340.2306769033495023No Hit
TGCCGTTACAATCTGC36350.20283273915709743No Hit
GAGAGAAGACTCACGG35620.1987593443954831No Hit
CTTAATCTGGGAATTA35620.1987593443954831No Hit
TTGTCAACTAATACAG35540.19831294496955276No Hit
GCTGTTCTGATAGGTA33400.18637176032591624No Hit
TCTTTCCACCGAGTGA32610.18196356599485414No Hit
TAGCGCGACAAGACAT31790.17738797187906816No Hit
GTAATCGTGATCCTCC30850.17214277862438668No Hit
TCGTATACTTTCTGGA30730.17147317948549118No Hit
AGTCCTGCTCCTAGTA30430.16979918163825242No Hit
GGGATGTGAAGGTGCA26830.1497112074713872No Hit
TGCAATGACACCTTGA26380.14720021070052902No Hit
TTGCGTCACCACTCAA25490.14223401708705402No Hit
GTTGTTGGATTCCATT25410.1417876176611237No Hit
CCTTTCTACTCGGGCT24560.13704462376061385No Hit
TGTCAATCTGGTGTCC24250.13531482598513378No Hit
GCAAATCTGGAATTGA24100.1344778270615144No Hit
TACGCCTTGCTGATCA23670.13207843014713885No Hit
TTGTTTGTGGCGCTGT23530.13129723115176073No Hit
TACAACCGATCGCTAA23310.13006963273045233No Hit
GGTTGAACTTCTTTGT22690.12661003717949218No Hit
CCCACCTCTCATGATC22150.12359684105446239No Hit
CAAGTGGGATAGCGAG21510.1200256456470197No Hit
CCTTTCTACTCATTTC21370.11924444665164159No Hit
TTCCACTCTCGAATCT21260.11863064744098738No Hit
AATCCAGACTACCAAC21010.1172356492349551No Hit
CTGCCATTGTCTTTGT20920.11673344988078346No Hit
TAAGGGCGATTTCTTG20770.11589645095716407No Hit
AGAACGCGAGGAGTCA20220.11282745490389298No Hit
TCTTTCCACTTCGCAA20050.11187885612379102No Hit
GTGGTAACTTTTCCGC19670.10975845885062192No Hit
GCTCCTAACGAATAGT19660.10970265892238064No Hit
GCGACGTTGAGTGGTG19260.10747066179272893No Hit
CGGAATTTGAGAGGCT19000.10601986365845534No Hit
CCAGCTTTGGGAATGC18180.10144426954266936No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)