FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004946624

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946624
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17555924
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT1718973297.9141399791888No Hit
AGCTGCGA551700.31425289833790576No Hit
CGCTGCGT431020.24551256886279527No Hit
AGCAGCGT371200.21143860044051227No Hit
AGCTGCGG301580.17178247069194422No Hit
AGCGGCGT229300.13061118286909879No Hit
AGGTGCGT195770.11151221661702342No Hit
TGCTGCGT177240.10095737484395581No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)