FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3705609
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTATG359147996.92007440612326No Hit
CCGGTATG162430.43833550706510055No Hit
CCGTTTTG144700.3904891206816477No Hit
CCGTTATA140440.37899303461320394No Hit
CCGTTAAG76920.20757721605274598No Hit
CCGATATG69070.18639311379047277No Hit
CCCTTATG66590.1797005566426463No Hit
CCGTTATC58230.15714016238626363No Hit
ACGTTATG55210.14899035489173304No Hit
CCGTAATG52680.14216286715624882No Hit
CCGTTATT51290.13841179681936222No Hit
CAGTTATG39120.10556969178345585No Hit
CCGTTAGG37060.10001055157195485No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)