FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3220938
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT89900.2791112402660343No Hit
TCGCGGTGAGTCTTGA88070.27342966551979575No Hit
GGGGGGGGGGGGGGGG79950.2482196180118959No Hit
GTTAAGAGAGTACGTT58110.18041328333547557No Hit
CGCTTACTGATCACAC55680.1728688971970277No Hit
ATCTTACTGGTTTGGT51070.15855629633355253No Hit
TTGTGGTGAAAGACAT50260.1560415009540699No Hit
TACCAGTGATACGATC49850.15476857983606018No Hit
ATTCCTAACTGCGTGC48240.14977003593363175No Hit
ATAGATGGAGAGTAAT48220.1497079422205581No Hit
ATATGCCGAGAACAGC45790.14216355608211023No Hit
GCGGTTCGAAGCAAGC43080.13374985796063132No Hit
TGGAACACTTGAGGCA42670.1324769368426216No Hit
CTTGACGCTCAGGGTA41730.1295585323281603No Hit
GCTATACGACAGGTGA41530.12893759519742384No Hit
AGGTAGCGATTGACCA39930.12397009815153226No Hit
AGCTCTGCTGGCCTGT38510.11956144452330347No Hit
CTTTCTGCTCTTGTGA38220.11866108568373561No Hit
ACTGGAACTCTGGAAG37090.11515279089507466No Hit
TGTGACTGACCGTTAA36120.11214124581100289No Hit
ACGCTCTTGCCTCAAA35150.1091297007269311No Hit
TGTACCCTGCTGAGAG35020.10872609159195241No Hit
AGTTCACGACCAGAGA34410.10683223334320624No Hit
TTCCAAACTCCGCTAG34090.10583873393402793No Hit
ACCCTTTCTAGGTGAC32940.10226834543229331No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)