FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3220938
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGG312915997.15055055390697No Hit
CTATTTGA227530.7064091267823225No Hit
CTATTTGC63940.19851360069644308No Hit
CTAATTGG60670.18836127860890214No Hit
CTATATGG59700.18534973352483033No Hit
CTATTTTG57570.17873675308248715No Hit
CGATTTGG56390.17507322401114211No Hit
CAATTTGG54370.16880175899070393No Hit
ATATTTGG46810.14533033544886612No Hit
CTTTTTGG46760.145175101166182No Hit
CTATTTCG41320.12828561121015059No Hit
CTATTAGG40070.12440475414304777No Hit
CTATTTGT37240.115618493743127No Hit
CTAGTTGG36910.11459394747741186No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)