FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946647

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946647
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2970443
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCACCT285623996.1553209403446No Hit
GCGCCCCT292400.9843649583580631No Hit
GCGCACCA226220.7615699072495248No Hit
GCGCACAT71050.23918991207708748No Hit
CCGCACCT61330.20646752016450073No Hit
GCCCACCT56880.191486589710693No Hit
GCGCACCG56540.19034197929399754No Hit
GCGAACCT47560.1601107982883361No Hit
GCGCAACT42510.14310996709918353No Hit
GCGCACGT30570.10291394246582075No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)