FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3512219
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGAGC341748097.30258847754084No Hit
GGTCGCGC310720.88468287427407No Hit
GGTCGAGA79650.22677970821295598No Hit
GGTCGACC67930.19341049063284493No Hit
GGACGAGC61260.1744196475219797No Hit
GGTCCAGC58220.16576415081178025No Hit
GGTAGAGC55440.15784892684653207No Hit
CGTCGAGC40920.11650754124386892No Hit
GCTCGAGC37390.10645691512972283No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)