FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3277531
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT626071.9101878822808998No Hit
AAATAGGTGTTGCGTA268390.8188786009956885No Hit
GGCTTGCGACGACATT246470.7519989894832422No Hit
TATCACTACTGGTCCG235530.7186202052703696No Hit
ATGGGTTACCATGCGC226430.6908554030457683No Hit
GTGTTGTGAGGGTAGT151770.4630619817173354No Hit
CTAATCTTGCCACTTC147670.4505525653304271No Hit
CTGCTTTCTCCACTTC132150.4031998476902278No Hit
AGAGAATTGCCTCCTA122120.3725975436998155No Hit
GGGGGGGGGGGGGGGG109210.333208137466892No Hit
AGCCGAGCTGCCCTTT96840.29546631290443937No Hit
CTGGCCAGAGGAATGC96580.2946730328408793No Hit
AATGGTGCTTCGTACA85740.2615993563447607No Hit
TCCCTGTGACCCGCAA73070.2229422086320465No Hit
GAGAGAAGACTCACGG69610.2123854816323629No Hit
TGCCGTTACAATCTGC65020.19838103743336066No Hit
CTTAATCTGGGAATTA62130.18956342441917406No Hit
TTGTCAACTAATACAG61770.18846503663886016No Hit
TCTTTCCACCGAGTGA58530.17857954661603506No Hit
GCTGTTCTGATAGGTA58130.1773591157490196No Hit
GTAATCGTGATCCTCC57680.17598613102362723No Hit
TAGCGCGACAAGACAT57040.17403344163640252No Hit
GGGATGTGAAGGTGCA56360.17195870916247627No Hit
TCGTATACTTTCTGGA54060.16494123167713745No Hit
GCTCCTAACCTATCTT52650.16063921287090802No Hit
AGTCCTGCTCCTAGTA52030.15874754502703406No Hit
GCAAATCTGGAATTGA50210.1531945845821138No Hit
TGCAATGACACCTTGA47300.14431595002457642No Hit
TTGCGTCACCACTCAA46520.14193610983389632No Hit
GTTGTTGGATTCCATT45900.14004444199002236No Hit
TGTCAATCTGGTGTCC44590.13604753090054678No Hit
CCTTTCTACTCGGGCT44590.13604753090054678No Hit
GGTTGAACTTCTTTGT41770.1274434932880879No Hit
TACAACCGATCGCTAA41500.12661970245285248No Hit
TACGCCTTGCTGATCA41480.12655868090950168No Hit
CAAGTGGGATAGCGAG40950.12494161001070624No Hit
TTGTTTGTGGCGCTGT40810.12451445920725084No Hit
TAAGGGCGATTTCTTG39750.12128031740965989No Hit
AATCCAGACTACCAAC39630.12091418814955525No Hit
CCCACCTCTCATGATC39440.12033448348772292No Hit
GAGGTGCCTTCGTACA39190.11957171419583827No Hit
TTCCACTCTCGAATCT38880.1186258802739013No Hit
CCTTTCTACTCATTTC37920.11569684619306424No Hit
AGAACGCGAGGAGTCA37900.11563582464971346No Hit
CTGCCATTGTCTTTGT37430.11420181838097032No Hit
TCTTTCCACTTCGCAA36210.1104795042365732No Hit
GTGGTAACTTTTCCGC36170.11035746114987166No Hit
CGGAATTTGAGAGGCT34860.10636055006039606No Hit
GAGAGGTTGATGTGGG33820.1031874298061559No Hit
AGCACATTGCTGGAAG33230.10138729427730812No Hit
CGTTTGCTGGCTAATC33010.10071605730044964No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)