FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2736085
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTCGAG264288296.59356343096066No Hit
AGCTCGCG261290.9549776414109942No Hit
AGCTCCAG61790.2258336272447676No Hit
AGCACGAG60140.21980311284188905No Hit
CGCTCGAG50290.18380276928531095No Hit
AGCTCGAC49920.1824504721161806No Hit
AGCTCGAA46140.1686351118477679No Hit
AGCTCGTG41540.15182276866398522No Hit
AGCGCGAG37600.13742263124135398No Hit
AGCTCGAT36390.13300025401257637No Hit
AGCTAGAG35280.12894336250518534No Hit
ACCTCGAG32690.11947728232127292No Hit
AGATCGAG31560.11534729366960456No Hit
TGCTCGAG28890.10558882490858289No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)