FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2811038
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG82500.29348589382285123No Hit
ACTGTCCACAGGTCCC51660.18377553060470903No Hit
CTGGTGGACGCGGTTC48800.1736013529521835No Hit
GTGGTTAACGGCCTGT42550.15136757311711901No Hit
AAGACAAACAGTACGG36710.13059232923923475No Hit
GTGTACTGACAGTCCG35160.12507835184013877No Hit
GGGTGAATGGACAAAT31920.11355236037364133No Hit
AGCTATCGACGGTTTA28770.10234653533676882No Hit
TGTCCCATGGCCAGCT28440.10117259176147743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)