FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946674

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946674
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5767306
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGGTAAA564370397.85683298233178No Hit
TAGGAAAA183990.3190224343913779No Hit
AAGGTAAA170690.2959614072844409No Hit
TAGCTAAA121970.2114852237769246No Hit
TACGTAAA107940.18715844104682497No Hit
TATGTAAA98010.16994069674818713No Hit
TAGGTAAT80150.13897303177601467No Hit
TAGGTAAC63840.11069293011329727No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)