FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946680

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946680
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2811038
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTCGAG272687497.00594584633862No Hit
AGCTCGCG224740.7994911488211828No Hit
AGCACGAG60710.21597004380588236No Hit
AGCTCCAG59640.21216362069811937No Hit
AGCTCGAC48320.17189379866085056No Hit
AGCTCGAA46430.16517030363872703No Hit
CGCTCGAG41770.14859279739370296No Hit
AGCTCGAT34590.12305063111918088No Hit
AGCTAGAG32980.11732320943366828No Hit
AGCGCGAG32720.1163982841925296No Hit
AGCTCGTG30740.10935462274078117No Hit
ACCTCGAG29750.10583279201490696No Hit
AGATCGAG29420.10465884843961554No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)