FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4184745
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT123660.2955018764584222No Hit
TCGCGGTGAGTCTTGA107690.2573394555701721No Hit
GGGGGGGGGGGGGGGG106400.2542568304639829No Hit
GTTAAGAGAGTACGTT84080.20092024723131277No Hit
CGCTTACTGATCACAC72970.1743714372082409No Hit
TACCAGTGATACGATC71280.17033295935594642No Hit
TTGTGGTGAAAGACAT70130.16758488271089397No Hit
ATCTTACTGGTTTGGT69970.16720254161245188No Hit
ATAGATGGAGAGTAAT67190.16055936502702076No Hit
ATTCCTAACTGCGTGC66940.159961957060705No Hit
ATATGCCGAGAACAGC64570.1542985295400317No Hit
TGGAACACTTGAGGCA61320.14653222597792698No Hit
GCTATACGACAGGTGA59520.14223088862045358No Hit
CTTTCTGCTCTTGTGA57100.13644797950651713No Hit
CTTGACGCTCAGGGTA55860.133484835993591No Hit
AGCTCTGCTGGCCTGT54570.13040221088740173No Hit
AGGTAGCGATTGACCA54430.1300676624262649No Hit
GCGGTTCGAAGCAAGC52990.12662659254028621No Hit
TGTGACTGACCGTTAA51870.12395020485119164No Hit
AGTTCACGACCAGAGA50830.12146498771131813No Hit
ACTGGAACTCTGGAAG50240.12005510491081296No Hit
ACCCTTTCTAGGTGAC48890.11682910189270793No Hit
TGTACCCTGCTGAGAG48560.11604052337717113No Hit
TTCCAAACTCCGCTAG45990.10989916948344522No Hit
ACATGTGTGTCAATGC45650.10908669464925581No Hit
TCCCAGACTCCTAACA45270.10817863454045587No Hit
TCAGTCCACCCAGCAC45190.10798746399123484No Hit
CACAGCTCTCTCTGGG44760.10695992228917175No Hit
ACACTCCACCGTACAT44720.10686433701456123No Hit
GAACTACTGGCCCTGA43580.10414015668816141No Hit
CAGTGGAGAGATCATC42660.10194169537211945No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)