FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4184745
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCACCT408729697.67132764361986No Hit
GCGCACCA260160.6216866260668212No Hit
GCGCCCCT249490.5961892540644651No Hit
GCGCACAT70550.1685885280943044No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)