FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3103905
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCGGTGAGTCTTGA88220.284222616349405No Hit
GGGGGGGGGGGGGGGG79890.2573854547739058No Hit
GGACACCTGGCTCCTT70480.22706880526304768No Hit
GTTAAGAGAGTACGTT58400.18815008835644131No Hit
CGCTTACTGATCACAC55180.17777605951213069No Hit
ATCTTACTGGTTTGGT53080.17101038852671072No Hit
TTGTGGTGAAAGACAT53080.17101038852671072No Hit
TACCAGTGATACGATC51330.16537232937219407No Hit
ATTCCTAACTGCGTGC48790.15718908922792418No Hit
ATAGATGGAGAGTAAT48770.15712465426615826No Hit
ATATGCCGAGAACAGC45590.14687949534537945No Hit
TGGAACACTTGAGGCA44630.14378661718061603No Hit
CTTTCTGCTCTTGTGA42300.13627994413488814No Hit
CTTGACGCTCAGGGTA42130.13573224695987796No Hit
AGCTCTGCTGGCCTGT40150.12935318574505342No Hit
TGTGACTGACCGTTAA38530.12413395384201513No Hit
ACTGGAACTCTGGAAG37940.12223312246992095No Hit
GCGGTTCGAAGCAAGC36630.1180126324742542No Hit
AGTTCACGACCAGAGA36060.11617623606392594No Hit
AGGTAGCGATTGACCA35750.1151774941565544No Hit
TGTACCCTGCTGAGAG35560.11456536201977831No Hit
ACCCTTTCTAGGTGAC34920.11250344324326936No Hit
ACGCTCTTGCCTCAAA34610.11150470133589785No Hit
TTCCAAACTCCGCTAG34140.10999047973439909No Hit
NNNNNNNNNNNNNNNN33680.10850847561378327No Hit
ACACTCCACCGTACAT33440.10773525607259242No Hit
TCCCAGACTCCTAACA33110.106672079203455No Hit
ACATGTGTGTCAATGC32950.10615659950932778No Hit
CAGTGGAGAGATCATC32700.10535116248725396No Hit
CACAGCTCTCTCTGGG32270.103965810809287No Hit
TCAGTCCACCCAGCAC32240.10386915836663815No Hit
GCTATACGACAGGTGA31180.10045410539304522No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)