FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946695

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946695
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3103905
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGAA301482197.12993793302309No Hit
ACCGCGAA206090.6639700635167636No Hit
AACGCCAA88920.2864778400112117No Hit
AACGCAAA76490.24643151127370203No Hit
AACCCGAA73360.2363474397573379No Hit
AACGAGAA53340.17184804302966747No Hit
AAAGCGAA46390.14945689381601562No Hit
AACGCGAT45160.1454941436674125No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)