FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004946703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30749307
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG3026501098.42501491171818No Hit
TCTATTAA636380.2069575096440385No Hit
ACTATTAG583220.18966931514911864No Hit
TCAATTAG475890.15476446347229875No Hit
TCTAATAG471070.15319694847106635No Hit
TCTATTTG429190.1395771293317277No Hit
TCTTTTAG378950.12323854973382002No Hit
TCTATTAT339850.11052281601012992No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)