FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946713

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946713
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3206475
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTTGAT315281298.32641763930796No Hit
AAGTTGAA119440.37249627706437755No Hit
AAGTAGAT42580.13279380004522098No Hit
AATTTGAT38150.11897800544211322No Hit
AAGTTGCT37930.11829189374624784No Hit
AAGATGAT37350.1164830538207845No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)