FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3864334
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGACTAC376988697.55590484673426No Hit
GGGCCTAC190910.4940307954747183No Hit
GGGACTAA100470.2599930544305953No Hit
GGGACAAC86230.22314323761869448No Hit
GCGACTAC53460.13834207912670074No Hit
CGGACTAC52670.1362977423794113No Hit
GGGAATAC51360.13290776625415918No Hit
GGCACTAC50260.13006122141616122No Hit
GGGACTCC45740.11836450990002417No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)