FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946721

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946721
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3337559
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT93500.280144860360521No Hit
TCGCGGTGAGTCTTGA93440.27996508825761585No Hit
GGGGGGGGGGGGGGGG85250.2554261962110632No Hit
GTTAAGAGAGTACGTT62960.18864085998180108No Hit
CGCTTACTGATCACAC58560.17545757243542362No Hit
ATCTTACTGGTTTGGT53500.16029679175708955No Hit
TACCAGTGATACGATC53400.15999717158558097No Hit
TTGTGGTGAAAGACAT52320.1567612737332883No Hit
ATAGATGGAGAGTAAT51510.1543343503440688No Hit
ATTCCTAACTGCGTGC51430.15409465420686197No Hit
ATATGCCGAGAACAGC47230.14151060700350165No Hit
TGGAACACTTGAGGCA46450.13917356966573474No Hit
CTTGACGCTCAGGGTA44330.1328216220297529No Hit
CTTTCTGCTCTTGTGA43500.1303347746062317No Hit
AGGTAGCGATTGACCA43440.1301550025033265No Hit
AGCTCTGCTGGCCTGT41750.12509142160483155No Hit
ACGCTCTTGCCTCAAA39480.11829004371158681No Hit
TGTGACTGACCGTTAA39050.11700167697409992No Hit
GCTATACGACAGGTGA38670.11586312032236734No Hit
ACTGGAACTCTGGAAG37810.11328638684739356No Hit
ACCCTTTCTAGGTGAC37250.11160851388694551No Hit
NNNNNNNNNNNNNNNN37180.11139877976688953No Hit
GCGGTTCGAAGCAAGC37060.11103923556107921No Hit
TGTACCCTGCTGAGAG36100.10816288191459686No Hit
AGTTCACGACCAGAGA35770.10717413534861855No Hit
TTCCAAACTCCGCTAG35160.10534645230241622No Hit
ACATGTGTGTCAATGC35140.10528652826811451No Hit
CACAGCTCTCTCTGGG34650.10381838942772248No Hit
ACACTCCACCGTACAT34420.10312926303325276No Hit
TCCCAGACTCCTAACA34040.10199070638152014No Hit
TCAGTCCACCCAGCAC33900.10157123814140813No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)