FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946730

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946730
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4373206
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGACTAC426355997.49275474331645No Hit
GGGCCTAC220320.5037951562309207No Hit
GGGACTAA114270.2612957176039729No Hit
GGGACAAC102230.2337644282021016No Hit
GGGAATAC67620.15462340443144001No Hit
CGGACTAC62300.14245841609107826No Hit
GCGACTAC59890.13694758490681663No Hit
GGCACTAC57290.1310022898532564No Hit
GGGACTCC52190.11934036494050361No Hit
TGGACTAC44810.1024648735961672No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)