FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3142264
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT636932.0269780005753812No Hit
GGCTTGCGACGACATT269520.8577255125603706No Hit
AAATAGGTGTTGCGTA264340.8412405832227974No Hit
TATCACTACTGGTCCG227930.7253687150411295No Hit
ATGGGTTACCATGCGC220580.7019779369270055No Hit
CTAATCTTGCCACTTC143970.4581728333456387No Hit
GTGTTGTGAGGGTAGT143250.45588149181609183No Hit
CTGCTTTCTCCACTTC132530.42176596237617203No Hit
AGAGAATTGCCTCCTA123040.3915648080492282No Hit
GGGGGGGGGGGGGGGG102440.32600698095386005No Hit
AGCCGAGCTGCCCTTT94150.2996247291761609No Hit
CTGGCCAGAGGAATGC93880.2987654761025808No Hit
AATGGTGCTTCGTACA85330.271555795439212No Hit
GCTCCTAACCTATCTT75770.24113187179689546No Hit
TCCCTGTGACCCGCAA74140.2359445291675047No Hit
GAGAGAAGACTCACGG64630.2056797264647401No Hit
TGCCGTTACAATCTGC63600.20240183510997167No Hit
GCTGTTCTGATAGGTA63530.20217906579459904No Hit
CTTAATCTGGGAATTA60150.19142249028089303No Hit
TTGTCAACTAATACAG60030.19104060002596854No Hit
TCTTTCCACCGAGTGA57690.18359374005494128No Hit
GTAATCGTGATCCTCC56220.17891558443211647No Hit
GGGATGTGAAGGTGCA55140.1754785721377962No Hit
TAGCGCGACAAGACAT54910.1747466158158576No Hit
TCGTATACTTTCTGGA52870.16825448148214153No Hit
AGTCCTGCTCCTAGTA52370.16666327208662288No Hit
GCAAATCTGGAATTGA49840.15861175254529855No Hit
TGCAATGACACCTTGA47250.15036928787651196No Hit
GTTGTTGGATTCCATT46510.14801429797114438No Hit
TTGCGTCACCACTCAA45870.1459775499448805No Hit
TGTCAATCTGGTGTCC45270.14406809867025813No Hit
CCTTTCTACTCGGGCT44000.14002642680564079No Hit
GGTTGAACTTCTTTGT41920.13340699572028322No Hit
TACGCCTTGCTGATCA41400.13175213794894383No Hit
TACAACCGATCGCTAA40830.12993815923805255No Hit
TTGTTTGTGGCGCTGT40530.12898343360074138No Hit
CAAGTGGGATAGCGAG39230.12484628917239289No Hit
TAAGGGCGATTTCTTG38390.12217305738792157No Hit
CCCACCTCTCATGATC38100.12125015593852076No Hit
CCTTTCTACTCATTTC37980.12086826568359628No Hit
AATCCAGACTACCAAC37800.12029543030120957No Hit
TTCCACTCTCGAATCT37700.11997718842210585No Hit
AGAACGCGAGGAGTCA37090.11803591295957311No Hit
CTGCCATTGTCTTTGT36360.11571274724211589No Hit
GCTCCTAACGAATAGT36260.11539450536301214No Hit
TCTTTCCACTTCGCAA35390.11262580101480969No Hit
CGGAATTTGAGAGGCT33180.1055926554866173No Hit
TATTGCTTGTTCGTTT31930.10161463199782068No Hit
AGCACATTGCTGGAAG31910.10155098362199995No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)