FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6899612
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG675135397.85119800939532No Hit
GCTATTAG250700.36335376540014136No Hit
ACTATTAG156960.22749105312008847No Hit
TCTATTAA144480.20940307947751266No Hit
TCAATTAG133240.1931123083442953No Hit
TCTTTTAG104040.15079108796262747No Hit
TCTAATAG97400.1411673583963852No Hit
TCTATAAG86100.1247896258514247No Hit
TATATTAG80300.11638335604958656No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)