FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946752

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946752
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2322730
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG69310.2983988668506456No Hit
TCGCGGTGAGTCTTGA65140.2804458546624016No Hit
GGACACCTGGCTCCTT64870.27928342941280304No Hit
GTTAAGAGAGTACGTT44970.19360838323868895No Hit
CGCTTACTGATCACAC41800.17996064975266174No Hit
TACCAGTGATACGATC40370.17380410120849174No Hit
ATCTTACTGGTTTGGT38230.1645908047857478No Hit
TTGTGGTGAAAGACAT38120.16411722412850396No Hit
ATAGATGGAGAGTAAT37060.15955362870415415No Hit
ATTCCTAACTGCGTGC36670.15787457001028962No Hit
ATATGCCGAGAACAGC35320.15206244376229694No Hit
TGGAACACTTGAGGCA34130.14693916210665897No Hit
CTTTCTGCTCTTGTGA31560.13587459584196185No Hit
GCGGTTCGAAGCAAGC31560.13587459584196185No Hit
CTTGACGCTCAGGGTA30770.13247342566721057No Hit
AGCTCTGCTGGCCTGT30330.13057910303823517No Hit
TGTGACTGACCGTTAA28850.12420729055895434No Hit
AGGTAGCGATTGACCA28810.12403507941086565No Hit
GCTATACGACAGGTGA28500.12270044301317846No Hit
AGTTCACGACCAGAGA28150.12119359546740258No Hit
ACTGGAACTCTGGAAG27860.11994506464375972No Hit
ACCCTTTCTAGGTGAC27670.11912706169033853No Hit
ACGCTCTTGCCTCAAA27060.11650084168198628No Hit
ACACTCCACCGTACAT25800.11107619051719314No Hit
TCAGTCCACCCAGCAC25320.10900965674012907No Hit
TGTACCCTGCTGAGAG25090.1080194426386192No Hit
TTCCAAACTCCGCTAG24840.10694312296306502No Hit
TCCCAGACTCCTAACA24580.10582375050048864No Hit
CACAGCTCTCTCTGGG24560.10573764492644432No Hit
ACATGTGTGTCAATGC23870.10276700262191474No Hit
CAGTGGAGAGATCATC23450.10095878556698368No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)