FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3784647
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA192240.5079469762966005No Hit
CGACCAGACGCGCTGT186320.4923048305429807No Hit
TAGCTTTACCCTATCC169730.44846983087194126No Hit
CCAGGACTGTAACTCG136000.35934659163721216No Hit
ATCTGTACTGGGACTA122400.3234119324734909No Hit
GTTCTCGACCGTAGAG121150.3201091145356489No Hit
CTTCCTTTGGCTCAGC116050.30663361734925343No Hit
GATGAATGACTCCTAC112860.2982048259718806No Hit
CGATCAAACCCGGCTA109290.28877197794140375No Hit
AGACCATTGAATCCAC104270.2755078611030302No Hit
TGCTGCTACTTTCTTG96990.2562722494330383No Hit
GGCAACAGAATAGCAA95240.25164830432005947No Hit
ACAGCCGACTTGCGTA90780.2398638499178391No Hit
GGGGGGGGGGGGGGGG89800.23727444065457093No Hit
AACTTACCTCACCTAA82100.21692908215746406No Hit
CGCGTTGGAGCGGTTC79030.2088173613021241No Hit
NNNNNNNNNNNNNNNN76940.20329504971005222No Hit
ATCGAAAGATTTCCGC74950.1980369635530077No Hit
CCCTGAACTAGCTTTG74350.19645161094284355No Hit
GTAACTGTGTGAAAGT73650.19460203289765202No Hit
AGTGGAGTGAGTTGAA69680.18411228312706576No Hit
CAATTCGGATAACGGG69520.183689522431022No Hit
GGGTAGAACCAGTCTA66880.17671397094629962No Hit
AAGAACCCTTAACCCA63060.1666205593282544No Hit
TTCCTAAACTAATGCC61040.1612832055407017No Hit
TTTAGTCTGAGCAATA59430.15702917603676114No Hit
GTGAAGCGATCCCAGG59340.15679137314523653No Hit
TCCGGGAACGTTCTCC58750.1552324430785751No Hit
CGCGATCGATATCTGG58560.1547304147520231No Hit
TGGAACACTCCTAGTA58360.15420196388196838No Hit
TGCAGATACTGCCACG56260.14865322974639378No Hit
CTTTAACTGTCCGTAA55310.14614308811363386No Hit
TGATAGAGAGACTGTT54980.14527114417804354No Hit
CACATCCTGAGCCTAT54850.14492765111250797No Hit
GAGTGTTACACCTGCG52820.13956387478145255No Hit
TGCAGTATGACACCGC52380.13840128286733214No Hit
GCAACTTGAAGGTGCA52230.1380049447147911No Hit
AGTCCTGCTCGAACGA51560.1362346343001078No Hit
CTATTGGGACTTGTGA51370.1357326059735558No Hit
TCTCAGAGATGCATGT51250.13541553545152296No Hit
CATAGGTACAAGGTGC51220.13533626782101474No Hit
AGGTGTGGATCATGTG49970.13203344988317273No Hit
TACGTTTACTGCACCG49570.13097654814306328No Hit
ATTTCTGACGGGTAGT49510.13081801288204686No Hit
TCAAAGCACTCTGCAA48630.12849282905380607No Hit
ATGTACGTGTACTTTC47970.12674894118262547No Hit
CTTAGATCTTGTCACA47690.12600910996454887No Hit
AGAGTACCTTAATCGC47600.12577130707302425No Hit
TTCTTAGACGTCCCGA47450.1253749689204832No Hit
TGGCAATTGAGTGGTG47200.1247144053329148No Hit
GGTCTAAACTCCTACC47140.12455587007189839No Hit
TGAACTGTGAACGTAA47110.12447660244139017No Hit
TGAGGGATGTACGTTG46770.12357823596229715No Hit
GGTCGCATGGTACTAC46600.12312905272275064No Hit
CGAGTCTCTGCTACGC45990.12151727756908372No Hit
TCTATGGGATGCTCAA45170.11935062900185936No Hit
GGGTGTGCTCGCAAAG45080.11911282611033473No Hit
TACTGTTTGCTTAAGC44690.11808234691372801No Hit
GCATGATACTTGCGTA44280.11699902263011583No Hit
GTAATCTCTACACAAA44250.11691975499960763No Hit
TCCATTTGAAATCTGC43800.11573074054198451No Hit
GGGATGTGACTGGAAG43560.11509659949791884No Hit
TCCGGGTGAACACCTA42910.11337913417024098No Hit
CTACAACGAATCTGTG42730.11290352838719173No Hit
CACCAGGTGCGCCACA41970.11089541508098379No Hit
CTAGCTCACGAATAGT41870.11063118964595642No Hit
AGACTACTGGCCCTAG41800.11044623184143726No Hit
CATTCTATGCCTAGCG41510.10967997807985791No Hit
GGCTGACTGAAACTGA41440.10949502027533875No Hit
TTGCGGTCTTTTGGGT41170.10878161160076487No Hit
TCGGACCGATAGGCGA41120.10864949888325119No Hit
AGCCAATTGTTATGGC40750.10767186477364996No Hit
CGAGTCTCTTGGAACG40450.10687918846856788No Hit
GGGCCTTGACTATCTT40180.106165779793994No Hit
ACCAAGTTGAAGCTAA39950.10555806129343107No Hit
TGCGCAGACATCAGGG39790.1051353005973873No Hit
CACATTACTGATGGAC39620.10468611735784078No Hit
TGTAAGCACGCGCTGT39390.10407839885727783No Hit
TGCTAGTGAAGGCGTA39120.10336499018270397No Hit
CTTTCGTCTCGAACGA39090.10328572255219576No Hit
ATGTCCAGACCGCTAG38700.10225524335558903No Hit
CATAGTCGAAGATTCC38650.10212313063807538No Hit
GCCATTCACCGGAAGT38330.1012776092459878No Hit
ATAGCCAACCGTTCTC38100.10066989074542487No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)