FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3754609
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGCGA364559897.09660846175994No Hit
TCCTGCGA249450.6643834284741768No Hit
TCATGCGC118480.3155588238349186No Hit
TCATGCAA102530.2730777026316189No Hit
TCAAGCGA72470.19301610367417754No Hit
ACATGCGA61860.16475750204615183No Hit
TCATGAGA51310.13665870400885952No Hit
TAATGCGA46160.12294222913757465No Hit
TCATGCCA44600.11878733577850584No Hit
TCATCCGA41470.1104509151285793No Hit
TCATGCGT37940.10104913720709666No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)