FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004946775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16207309
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGTGTC1600890598.77583626004785No Hit
CCGGTGTA404120.24934429275088174No Hit
CCGGTGAC180270.1112275949079517RNA PCR Primer, Index 37 (100% over 8bp)
CCGGAGTC175520.10829681842926546No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)