FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004946778

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17994877
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGCCAC1754469697.49828242782654No Hit
TAAGCCCC1722570.9572557789642019No Hit
AAAGCCAC593690.3299216771528919No Hit
TAAGCCAA391790.21772307751811806No Hit
TAATCCAC308820.17161551034775063No Hit
TAACCCAC286780.1593675800062429No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)