FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004946790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17515295
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCAAGG1726496698.57079769424381No Hit
ATCCAAGA522870.29852194895946654No Hit
AACCAAGG299300.1708792229876802No Hit
ATCCAACG232020.1324670809141382No Hit
ATCCAAGC203850.1163839946743689No Hit
ATACAAGG181700.1037379045000384No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)