FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3325367
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA132050.3970990269645426No Hit
GTCGACCGATGCTCAA121070.36408011506699867No Hit
CATTCAACTAGGCATG114090.3430899506731137No Hit
ACTGGGCACTTCTCGC93750.2819237696170077No Hit
TGTAAGCTGTTGTGAC92070.27687169566547093No Hit
GGGGGGGGGGGGGGGG91320.27461630550853483No Hit
GCTTTAGGAACTAGTC74550.2241857815994445No Hit
NNNNNNNNNNNNNNNN68400.20569158231256882No Hit
CATCAGTGATTCGCAA54060.1625685225119513No Hit
TAGTTGCGACATAGCT52960.1592606169484451No Hit
CAGGAGCCTCGTGCAC44600.1341205346657978No Hit
CAGGAGCCTTCCAATG39220.11794186927337645No Hit
TCCTTAAACAGGGAGG35720.10741671520767482No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)